P A U P *
Version 4.0a (build 168) for macOS (built on Aug  2 2020 at 06:41:30)
Sun Dec  7 10:36:42 2025


Heuristic search settings:
  Optimality criterion = parsimony
    Character-status summary:
      Of 13 total characters:
        All characters are of type 'unord'
        All characters have equal weight
        2 characters are parsimony-uninformative
        Number of parsimony-informative characters = 11
    Gaps are treated as "missing"
  Starting tree(s) obtained via stepwise addition
    Addition sequence: random
    Number of replicates = 100
    Starting seed = generated automatically
    Number of trees held at each step = 10
  Branch-swapping algorithm: tree-bisection-reconnection (TBR) with reconnection limit = 8
    Steepest descent option not in effect
  Initial 'Maxtrees' setting = 100 (will be auto-increased by 100)
  Branches collapsed (creating polytomies) if maximum branch length is zero
  'MulTrees' option in effect
  No topological constraints in effect
  Trees are unrooted

Heuristic search completed
  Total number of rearrangements tried = 4008507
  Score of best tree(s) found = 30
  Number of trees retained = 342
  Time used = 2.63 sec (CPU time = 2.63 sec)

Tree-island profile:
                     First      Last                        First    Times
Island      Size      tree      tree           Score    replicate      hit
--------------------------------------------------------------------------
     1       342         1       342              30            1     100

10 trees saved to file "~/Desktop/AIHistory/ELIZA_See_also_GDrive/elizagen_repo/genealogy/results/best_trees.tre"

Error(#143): Keyword "savetrees" is not recognized.
                 If the keyword is valid for the current command and it is spelled correctly, look for problems in a previous command,
                 such as a missing semicolon.

Error occurred while processing line 102 of file elizas.nexus

Processing of input file "elizas.nexus" terminated due to errors.